miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica oleracea var. alboglabra, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST008651
species: Brassica oleracea
miRNA family: MIR529
source: miRNEST

Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGAAGAAAGAGAGCACAGTAG

miRNA*
GAGGTTTTCTATCTTCTAA

mismatches: 3
bulges: 2

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pre-miRNA
GGAGATCATGCGTTTGGTAACCACACTATGAAGAAGAAAGAGAGCACAGTAGGTGAAGAGTACAGCTTGTTTGCGGAAAGCAGCAGCTTGAGGTTTTCTA
TCTTCTAA
AAAGCTTTTTATACAGTTTACTGGACAA


dot-bracket secondary structure
.....(((((.((.(((...))).)))))))((((((.(((((((....(((((...((((...))))..((((.....))))..)))))..))))))).
))))))..
.............(((....))).....



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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